TreeFam
TF329572
 Tree families database The Sanger Institute Beijing Genomics Institute
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HMMer Matches
Instructions

DCLRE1C_F2PANTR1504.8
DCLRE1CCANFA1502.1
DCLRE1CHUMAN1499.6
A6QLL4BOVIN1482.8
DCLRE1CHORSE1477.2
Dclre1c_F4MOUSE1449.6
Dclre1cRAT1442.5
DCLRE1CORNAN1434.4
DCLRE1CMONDO1431.6
DCLRE1CMACMU1360.9
DCR1CCHICK1355.6
DCLRE1CMICMU1353.7
DCLRE1CXENTR1349.9
DCLRE1C_F2GASAC1248.7
dclre1cBRARE1247.4
DCLRE1CORYLA1247.3
DCLRE1CSPETR1224
DCLRE1CFELCA1204.4
DCLRE1CTUPGB1185.5
DCR1CPONPY1157.7
DCLRE1CTETNG1144.7
DCLRE1COCHPR1106.2
DCLRE1CECHTE1056.2
DCLRE1COTOGA1016.4
DCLRE1CLOXAF971
DCLRE1BPONPY775.6
DCLRE1BHUMAN773.2
DCLRE1BMACMU773.1
DCLRE1BPANTR771.5
DCLRE1CMYOLU760.2
DCLRE1BCANFA758
Dclre1bRAT757.4
Dclre1bMOUSE754.7
DCLRE1BHORSE733.7
DCLRE1BFELCA725.9
DCLRE1BMYOLU710
DCLRE1BRABIT703.5
DCLRE1BOTOGA681.2
DCLRE1BMICMU679.9
ENSDART00000099692BRARE677.7
DCLRE1CRABIT672.3
DCLRE1BORNAN668.4
DCLRE1BCAVPO666.1
DCLRE1BBOVIN642.4
DCLRE1CDASNO570.7
DCR1BCHICK551.7
DCLRE1BOCHPR513.4
DCLRE1BSPETR497.1
DCLRE1BLOXAF462.6
DCLRE1CERIEU431.8
XP_310480ANOGA368.4
DCLRE1CSORAR324.6
ENSDNOT00000000665DASNO319.3
jgi|Capca1|225584|estExt_fgeneCAPIT307.9
DCLRE1BXENTR307.4
jgi|Brafl1|85286|fgenesh2_pg.sBRAFL303.4
jgi|Triad1|53902|fgeneshTA2_pgTRIAD297.2
Sp-Dclr-1STRPU280.5
jgi|Brafl1|91025|fgenesh2_pg.sBRAFL269.3
Sp-mGluR-7STRPU261.3
DCLRE1BTETNG251.1
DCLRE1BORYLA235.2
ENSDNOT00000007202DASNO226.8
DCLRE1BGASAC206.2
DCLRE1BECHTE133.7
BGIBMGA001792BOMMO109.8
ENSCINT00000008060CIOIN92.6
DCLRE1BERIEU77.8
At1g66730.1ARATH67.6
BGIBMGA012879BOMMO55.4
dsim_GLEANR_3584_caf1DROSI50.5
DCLRE1CCAVPO46.8
BGIOSIFCE004563.1ORYSA46.7
At1g27410.1ARATH39.1
Snm1-RADROME38.2
dyak_GLEANR_10088_caf1DROYA35.6
BGIOSIFCE026559.1ORYSA27.6
jgi|Brafl1|64995|fgenesh2_pg.sBRAFL15.2
jgi|Nemve1|222359|fgenesh1_pg.NEMVE14.9
dere_GLEANR_1293_caf1DROER14.8
jgi|Brafl1|127325|estExt_fgeneBRAFL14.6
jgi|Brafl1|76211|fgenesh2_pg.sBRAFL13.7
dmoj_GLEANR_5278_caf1DROMO13.4
At1g19025.1ARATH12.7
DDB0202354DICDI12.7
jgi|Brafl1|68658|fgenesh2_pg.sBRAFL12.3
jgi|Triad1|57642|fgeneshTA2_pgTRIAD12.1
jgi|Brafl1|68413|fgenesh2_pg.sBRAFL12
dvir_GLEANR_5551_caf1DROVI11.6
ENSCINT00000020130CIOIN10.9
dwil_GLEANR_16503_caf1DROWI10.4
jgi|Dappu1|105663|fgenesh1_pg.DAPPU10.4
jgi|Brafl1|131860|estExt_fgeneBRAFL10.1
jgi|Brafl1|83430|fgenesh2_pg.sBRAFL9.9
jgi|Lotgi1|173233|fgenesh2_pg.LOTGI9.8

Descriptions
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AccessionTF329572
SymbolDCLRE1C
Family NameDNA cross-link repair 1B protein Artemis
Family Sizefull: 62

(Please mail to treefam@sanger.ac.uk if you think this tree is wrong or have any other comments.)

View Automatic Clean Tree
Instructions ATV TreeView

BGIOSIFCE004563.1_ORYSA
At1g19025.1_ARATH
DCLRE1B_HUMAN
DCLRE1B_PANTR
DCLRE1B_MACMU
DCLRE1B_BOVIN
DCLRE1B_CANFA
Dclre1b_F4_MOUSE
Dclre1b_RAT
DCR1B_CHICK
ENSDART00000099692_BRARE
DCLRE1C_HUMAN
DCLRE1C_F2_PANTR
DCLRE1C_MACMU
A6QLL4_BOVIN
DCLRE1C_CANFA
Dclre1c_F4_MOUSE
Dclre1c_RAT
DCLRE1C_MONDO
DCR1C_CHICK
DCLRE1C_XENTR
dclre1c_BRARE
DCLRE1C_TETNG
DCLRE1C_F2_GASAC
ENSCINT00000008060_CIOIN
XP_310480_ANOGA

View MultiAlignment
Instructions

AGAP000597
chromosomeX: 10674548-10675769
Taxon: Anopheles gambiae [7165]
At1g19025
68414.m02368 DNA cross-link repair protein-related contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 [Saccharomyces cerevisiae]
chromosome1: 6568910-6570791
Taxon: Arabidopsis thaliana [3702]
ENSBTAG00000003616
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome3: 31933331-31939008
Taxon: Bos taurus [9913]
ENSBTAG00000010220
LOC517886 protein. [Source:Uniprot/SPTREMBL;Acc:A6QLL4]
chromosome13: 29189829-29223741
Taxon: Bos taurus [9913]
ENSCAFG00000004692
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome2: 24523146-24558496
Taxon: Canis familiaris [9615]
ENSCAFG00000009277
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome17: 54787323-54792114
Taxon: Canis familiaris [9615]
ENSCING00000003907
scaffoldscaffold_92: 306397-310029
Taxon: Ciona intestinalis [7719]
ENSCPOG00000001287
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_3237: 10025-16342
Taxon: Cavia porcellus [10141]
ENSCPOG00000002724
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4553: 7885-74611
Taxon: Cavia porcellus [10141]
ENSDARG00000045704
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein). [Source:Uniprot/SWISSPROT;Acc:Q5RGE5]
chromosome4: 9968346-9974195
Taxon: Danio rerio [7955]
ENSDARG00000068833
hypothetical protein LOC768137 [Source:RefSeq_peptide;Acc:NP_001070751]
chromosome8: 22532345-22536599
Taxon: Danio rerio [7955]
ENSDNOG00000000663
scaffoldscaffold_12975: 14029-16254
Taxon: Dasypus novemcinctus [9361]
ENSDNOG00000007209
scaffoldscaffold_32946: 3-3997
Taxon: Dasypus novemcinctus [9361]
ENSDNOG00000007426
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4571: 1518-45830
Taxon: Dasypus novemcinctus [9361]
ENSECAG00000021685
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome5: 54745281-54750764
Taxon: Equus caballus [9796]
ENSECAG00000023853
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome29: 20061718-20096399
Taxon: Equus caballus [9796]
ENSEEUG00000003852
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_5279: 47409-65942
Taxon: Erinaceus europaeus [9365]
ENSEEUG00000009669
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_2791: 1055-23229
Taxon: Erinaceus europaeus [9365]
ENSETEG00000007016
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_3682: 12276-21327
Taxon: Echinops telfairi [9371]
ENSETEG00000018001
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_7819: 131256-156382
Taxon: Echinops telfairi [9371]
ENSFCAG00000009158
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_2905: 232522-417259
Taxon: Felis catus [9685]
ENSFCAG00000009241
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_509: 1076799-1081989
Taxon: Felis catus [9685]
ENSGACG00000020073
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
groupgroupIV: 32351060-32355183
Taxon: Gasterosteus aculeatus [69293]
ENSGALG00000001911
DNA cross-link repair 1B protein (chSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q5QJC3]
chromosome26: 3597633-3599937
Taxon: Gallus gallus [9031]
ENSGALG00000013926
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (chSNM1C) (SNM1-like protein). [Source:Uniprot/SWISSPROT;Acc:Q5QJC2]
chromosome1: 7876956-7886518
Taxon: Gallus gallus [9031]
ENSLAFG00000008062
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_6910: 526900-544130
Taxon: Loxodonta africana [9785]
ENSLAFG00000011704
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4419: 25604-74526
Taxon: Loxodonta africana [9785]
ENSMICG00000001396
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_4549: 840868-846707
Taxon: Microcebus murinus [30608]
ENSMICG00000002808
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4126: 80315-108388
Taxon: Microcebus murinus [30608]
ENSMLUG00000007477
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_2466: 141680-145112
Taxon: Myotis lucifugus [59463]
ENSMLUG00000015990
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_3497: 114084-170654
Taxon: Myotis lucifugus [59463]
ENSMMUG00000017176
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome9: 15183222-15229609
Taxon: Macaca mulatta [9544]
ENSMMUG00000019527
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome1: 116901490-116908007
Taxon: Macaca mulatta [9544]
ENSMODG00000016932
NULL
chromosome8: 139434415-139475698
Taxon: Monodelphis domestica [13616]
ENSMUSG00000026648
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (mArt protein) (SNM1-like protein). [Source:Uniprot/SWISSPROT;Acc:Q8K4J0]
chromosome2: 3341489-3371081
Taxon: Mus musculus [10090]
ENSMUSG00000027845
DNA cross-link repair 1B protein. [Source:Uniprot/SWISSPROT;Acc:Q8C7W7]
chromosome3: 103606890-103613011
Taxon: Mus musculus [10090]
ENSOANG00000003000
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome7: 35669007-35674687
Taxon: Ornithorhynchus anatinus [9258]
ENSOANG00000015394
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
supercontigContig13: 483464-497429
Taxon: Ornithorhynchus anatinus [9258]
ENSOCUG00000003782
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_2003: 220333-226678
Taxon: Oryctolagus cuniculus [9986]
ENSOCUG00000010154
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4040: 4-42035
Taxon: Oryctolagus cuniculus [9986]
ENSOGAG00000004732
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_353: 362216-400190
Taxon: Otolemur garnettii [30611]
ENSOGAG00000013917
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_473: 214096-224017
Taxon: Otolemur garnettii [30611]
ENSOPRG00000009475
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_5083: 478582-669316
Taxon: Ochotona princeps [9978]
ENSOPRG00000015193
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_1430: 193996-203185
Taxon: Ochotona princeps [9978]
ENSORLG00000017304
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome23: 23166144-23172412
Taxon: Oryzias latipes [8090]
ENSPPYG00000001005
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome1: 114330344-114337056
Taxon: Pongo pygmaeus [9600]
ENSPPYG00000002107
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein). [Source:Uniprot/SWISSPROT;Acc:Q5R6Z9]
chromosome10: 15639624-15671456
Taxon: Pongo pygmaeus [9600]
ENSPTRG00000001128
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome1: 123751607-123758215
Taxon: Pan troglodytes [9598]
ENSPTRG00000002314
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome10: 15297516-15345071
Taxon: Pan troglodytes [9598]
ENSRNOG00000015980
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein). [Source:Uniprot/SWISSPROT;Acc:Q5XIX3]
chromosome17: 85896598-85928621
Taxon: Rattus norvegicus [10116]
ENSRNOG00000019367
DNA cross-link repair 1B, PSO2 homolog [Source:RefSeq_peptide;Acc:NP_001020858]
chromosome2: 199027875-199033906
Taxon: Rattus norvegicus [10116]
ENSSARG00000011185
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_4305: 700-26518
Taxon: Sorex araneus [42254]
ENSSTOG00000002227
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_3422: 25701-60710
Taxon: Spermophilus tridecemlineatus [43179]
ENSSTOG00000014699
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
genescaffoldGeneScaffold_2443: 100771-105110
Taxon: Spermophilus tridecemlineatus [43179]
ENSG00000118655
DNA cross-link repair 1B protein (hSNM1B). [Source:Uniprot/SWISSPROT;Acc:Q9H816]
chromosome1: 114249731-114256336
Taxon: Homo sapiens [9606]
ENSG00000152457
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome10: 14990412-15036015
Taxon: Homo sapiens [9606]
ENSTBEG00000006858
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
genescaffoldGeneScaffold_347: 347569-391582
Taxon: Tupaia belangeri [37347]
ENSTNIG00000012683
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
chromosome19: 1621242-1624958
Taxon: Tetraodon nigroviridis [99883]
ENSXETG00000005403
Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein) (SNM1- like protein) (A-SCID protein) (hSNM1C). [Source:Uniprot/SWISSPROT;Acc:Q96SD1]
scaffoldscaffold_138: 982214-996419
Taxon: Xenopus tropicalis [8364]
Last Modified Thu Aug 2 03:14:18 2007 treefam@sanger.ac.uk