TreeFam
BGIOSIFCE001499.1
 Tree families database The Sanger Institute Beijing Genomics Institute
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Descriptions
TreeFam Ortholog
Ensembl Ortholog
Ensembl Family

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Descriptions

Sequence IDBGIOSIFCE001499.1 => Inparanoid
Transcript IDBGIOSIFCE001499
Gene IDBGIOSIFCE001499 (BGIOSIFCE001499.1)
SymbolBGIOSIFCE001499.1
SpeciesOryza sativa (ORYSA)
DescriptionPredicted; Subspecies:9311
Display IDBGIOSIFCE001499.1_ORYSA (TF300560)
Related FamilyTF300560 (BGIOSIFCE001499.1)
Xrefs
Peptide
MATGQIFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSDGFQKLFFGQEE
IAIPVHPTIEAACNAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTK
QLISYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMS
NEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGKDEYSL
VEALKQGKVQKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALKDAGAVVP
TSYEALETAIKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTISDD
RGEEPCYAGVPMSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVSGA
HNSIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKKKG
IRVPGIGHRIKSRDNRDKRVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG
AIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
WEDVLYTK
Nucleotide
ATGGCGACAGGTCAAATTTTCTCCAAAACCACCCAAGCGTTATTCTATAATTATAAGCAA
CTTCCGATCCAACGGATGCTTGATTTTGACTTCCTATGTGGGAGAGAAACACCTTCTGTT
GCTGGAATAATCAATCCTGGTTCTGATGGGTTTCAGAAACTTTTCTTTGGACAAGAAGAA
ATTGCCATTCCAGTTCATCCTACAATTGAAGCTGCCTGCAATGCACACCCAACTGCTGAT
GTATTTATCAACTTTGCATCCTTTCGGAGCGCTGCCGCTTCTTCAATGTCAGCTTTGAAG
CAGCCAACAATCAGAGTTGTAGCCATCATAGCAGAGGGTGTTCCTGAATCAGATACAAAA
CAACTTATTAGTTATGCACGTGCCAACAACAAGGTAATCATTGGACCAGCAACAGTTGGA
GGAATCCAAGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCATTGACAACATTATT
CAATGCAAGCTTTACAGGCCTGGATCTGTTGGCTTTGTTTCTAAATCGGGTGGCATGTCA
AATGAGATGTACAACACCATTGCCAGAGTGACAGATGGTATTTATGAAGGAATTGCAATT
GGAGGGGATGTTTTCCCTGGCTCAACTCTGTCAGACCACATCCTGCGTTTCAACAACATA
CCTCAGGTCAAAATGATGGTTGTTCTTGGGGAGCTTGGAGGAAAAGATGAGTATTCTCTT
GTTGAAGCCCTGAAACAAGGAAAGGTTCAGAAACCTGTTGTTGCATGGGTTAGTGGGACA
TGCGCTCGTCTATTCAAGTCTGAAGTGCAGTTTGGCCATGCTGGTGCGAAAAGTGGTGGT
GAGTTGGAATCAGCACAAGCTAAGAACCAGGCACTAAAAGATGCCGGGGCAGTTGTCCCT
ACTTCATATGAAGCTCTTGAAACTGCGATCAAGGAGACATTTGAGAAACTGGTTGAGGAC
GGAAAGATCTCTCCTGTTACTGAGATTACACCACCTCCTATTCCAGAGGATCTTAAAACC
GCAATTAAGAGTGGGAAGGTCCGAGCTCCCACACACATTATCTCCACTATCTCGGATGAC
AGAGGCGAGGAACCCTGCTATGCTGGTGTCCCCATGTCTACAATTATTGAACAGGGTTAT
GGAGTTGGTGACGTTATTTCGCTTTTGTGGTTCAAGCGCAGTCTTCCTCGTTACTGCACT
CAGTTTATTGAGATGTGCATCATGCTTTGTGCTGATCATGGTCCTTGTGTATCCGGTGCT
CACAATTCTATAGTTACTGCTAGGGCTGGAAAGGACCTTGTTTCCAGCTTGGTATCTGGT
TTATTGACAATTGGCCCCCGTTTTGGTGGTGCAATTGATGATGCTGCCCGGTACTTCAAA
GATGCATATGATAGAAATCTCACACCTTATGAGTTCGTTGAGGGTATGAAAAAGAAGGGA
ATCCGTGTCCCTGGGATTGGTCACAGGATCAAGAGCAGAGACAACAGAGATAAGAGAGTG
CAGCTTCTACAGAAATATGCCCACACACATTTCCCTTCTGTCAAATACATGGAGTATGCT
GTCCAGGTTGAGACCTACACCCTGTCAAAAGCCAACAATTTGGTTCTGAACGTCGATGGT
GCGATTGGGTCGCTTTTCTTGGATCTTCTTTCTGGCAGTGGAATGTTCAGCAAACAAGAA
ATCGATGAGATTGTTGAGATTGGTTACCTTAATGGACTCTTTGTGCTTGCGCGTTCAATT
GGTCTCATCGGGCACACCTTTGACCAGAAGAGGCTCAAGCAACCACTCTACCGCCACCCA
TGGGAGGATGTCCTCTACACCAAGTGA

TreeFam Orthologs and Within-Species Paralogs [TF300560]

TranscriptGeneSpeciesAncestorScoreSymbol
At5g49460.1At5g49460Arabidopsis thalianaMagnoliophyta100
At3g06650.1At3g06650Arabidopsis thalianaMagnoliophyta100
CBG09435CBG09435Caenorhabditis briggsaeEukaryota77
B0365.1B0365.1Caenorhabditis elegansEukaryota77WBGene00007150
cr01.sctg13.wum.175cr01.sctg13.wum.175Caenorhabditis remaneiEukaryota77cr01.sctg13.wum.175.1
CBG24512CBG24512Caenorhabditis briggsaeEukaryota77
D1005.1D1005.1Caenorhabditis elegansEukaryota77WBGene00016995
cr01.sctg17.wum.34cr01.sctg17.wum.34Caenorhabditis remaneiEukaryota77cr01.sctg17.wum.34.1
Smp_127730Smp_127730Schistosoma mansoniEukaryota96
SPBC1703.07SPBC1703.07Schizosaccharomyces pombeEukaryota100
FBtr0087266FBgn0020236Drosophila melanogasterEukaryota74ATPCL-RB
AAEL004297-RAAAEL004297Aedes aegyptiEukaryota74
AGAP010156-RAAGAP010156Anopheles gambiaeEukaryota74XP_001238142_F2
ENSOGAT00000004643ENSOGAG00000004641Otolemur garnettiiEukaryota74ACLY
ENSCINT00000018161ENSCING00000008942Ciona intestinalisEukaryota75NP_001027756
ENSCSAVT00000019586ENSCSAVG00000011368Ciona savignyiEukaryota75
ENSXETT00000004892ENSXETG00000002292Xenopus tropicalisEukaryota74ACLY
ENSETET00000011243ENSETEG00000011235Echinops telfairiEukaryota74ACLY
ENSCINT00000021255ENSCING00000016997Ciona intestinalisEukaryota77
ENSDNOT00000004836ENSDNOG00000004829Dasypus novemcinctusEukaryota74ACLY
ENSSART00000007547ENSSARG00000007500Sorex araneusEukaryota74ACLY
ENSLAFT00000006962ENSLAFG00000006961Loxodonta africanaEukaryota74ACLY
ENSOCUT00000013220ENSOCUG00000013212Oryctolagus cuniculusEukaryota74ACLY
ENSGALT00000005502ENSGALG00000003475Gallus gallusEukaryota74NP_001025711
ENSOANT00000009224ENSOANG00000005788Ornithorhynchus anatinusEukaryota74ACLY_F2
ENSMODT00000018756ENSMODG00000014738Monodelphis domesticaEukaryota74ACLY
ENSMLUT00000011915ENSMLUG00000011901Myotis lucifugusEukaryota74ACLY
ENSFCAT00000002140ENSFCAG00000002140Felis catusEukaryota74ACLY
ENSCAFT00000025093ENSCAFG00000015818Canis familiarisEukaryota74ACLY
ENSMUST00000107389ENSMUSG00000020917Mus musculusEukaryota74Acly
ENSRNOT00000023447ENSRNOG00000016924Rattus norvegicusEukaryota74Acly
ENSBTAT00000022258ENSBTAG00000016740Bos taurusEukaryota74ACLY_F2
ENSMMUT00000026616ENSMMUG00000018931Macaca mulattaEukaryota74ACLY
ENST00000406400ENSG00000131473Homo sapiensEukaryota74ACLY
ENSPTRT00000046197ENSPTRG00000023148Pan troglodytesEukaryota74ACLY
ENSDART00000078037ENSDARG00000055652Danio rerioEukaryota74LOC794259
ENSTNIT00000009568ENSTNIG00000006620Tetraodon nigroviridisEukaryota74ACLY-----4-of-4-
ENSORLT00000017407ENSORLG00000013878Oryzias latipesEukaryota74ACLY--1-of-2-
ENSGACT00000008268ENSGACG00000006221Gasterosteus aculeatusEukaryota74ACLY--1-of-2-
ENSDART00000044162ENSDARG00000017738Danio rerioEukaryota74acly
ENSORLT00000004629ENSORLG00000003711Oryzias latipesEukaryota74ACLY---2-of-2-
ENSGACT00000011663ENSGACG00000008812Gasterosteus aculeatusEukaryota74ACLY---2-of-2-
ENSTNIT00000009718ENSTNIG00000006758Tetraodon nigroviridisEukaryota74ACLY----3-of-4-
ENSTNIT00000009710ENSTNIG00000006750Tetraodon nigroviridisEukaryota74ACLY--1-of-4-

Ensembl Orthologs and Within-Species Paralogs

GeneSpeciesAncestorMethodTreeFam

Ensembl Family


Last Modified Tue Nov 13 11:06:03 2007 treefam@sanger.ac.uk