TreeFam
ENSRNOT00000033592.1
 Tree families database The Sanger Institute Beijing Genomics Institute
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Descriptions
TreeFam Ortholog
Ensembl Ortholog
Ensembl Family

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Descriptions

Sequence IDENSRNOT00000033592.1 => Inparanoid
Transcript IDENSRNOT00000033592
Gene IDENSRNOG00000028043 (ENSRNOT00000033592.1, ENSRNOT00000034090.2)
SymbolGm1960_F2
SpeciesRattus norvegicus (RAT)
DescriptionMacrophage inflammatory protein 2-beta precursor (MIP2-beta) (CINC-2- beta). [Source:Uniprot/SWISSPROT;Acc:Q10747]
Display IDGm1960_F2_RAT (TF333433)
Related FamilyTF333433 (ENSRNOT00000033592.1)
Xrefs
Uniprot/SWISSPROTMIP2A_RAT
EntrezGeneBAB12279.1
EntrezGeneBAB12280.1
Peptide
MAPPTRRLLNAALLLLLLLMATSHQPSGTVVARELRCQCLKTLPRVDFENIQSLTVTPPG
PHCTQTEVIATLKDGQEVCLNPQAPRLQKIIQKLLKSDKSS
Nucleotide
ATGGCCCCTCCCACCCGCCGGCTCCTCAATGCTGCACTGCTTCTGCTGCTTCTGCTGATG
GCCACCAGCCACCAACCTTCAGGGACTGTTGTGGCCCGTGAGCTGCGCTGTCAGTGCCTG
AAGACCCTACCAAGGGTTGATTTTGAGAACATCCAGAGCTTGACGGTGACCCCTCCAGGA
CCGCACTGCACCCAGACAGAAGTCATAGCCACTCTCAAGGATGGTCAAGAAGTTTGTCTC
AACCCTCAAGCTCCCAGGCTTCAGAAAATCATCCAGAAGTTACTGAAGAGTGACAAGTCC
AGCTGA

TreeFam Orthologs and Within-Species Paralogs [TF333433]

TranscriptGeneSpeciesAncestorScoreSymbol
ENSDART00000079372ENSDARG00000056824Danio rerioEuteleostomi38LOC100002946_F2
ENSDNOT00000017292ENSDNOG00000017292Dasypus novemcinctusEutheria16
ENSGACT00000002257ENSGACG00000001729Gasterosteus aculeatusEuteleostomi43PPBP
ENSMODT00000024376ENSMODG00000019188Monodelphis domesticaTheria46
ENSORLT00000006430ENSORLG00000005096Oryzias latipesEuteleostomi39PPBP
ENSRNOT00000031667ENSRNOG00000022298Rattus norvegicusEuteleostomi100Cxcl11
ENSRNOT00000003075ENSRNOG00000022256Rattus norvegicusEuteleostomi100Cxcl10
ENSRNOT00000003082ENSRNOG00000022242Rattus norvegicusEuteleostomi100Cxcl9
ENSRNOT00000003745ENSRNOG00000002792Rattus norvegicusMurinae100Cxcl2
ENSRNOT00000003794ENSRNOG00000002829Rattus norvegicusMammalia100Cxcl7
ENSRNOT00000003823ENSRNOG00000002843Rattus norvegicusMammalia100Cxcl5
ENSTNIT00000021199ENSTNIG00000017810Tetraodon nigroviridisEuteleostomi41PPBP
ENSMUST00000031326ENSMUSG00000029379Mus musculusMurinae100Cxcl3
ENSSART00000005618ENSSARG00000005640Sorex araneusEutheria42
ENSMLUT00000017612ENSMLUG00000017608Myotis lucifugusEutheria8
ENSMLUT00000006718ENSMLUG00000006717Myotis lucifugusEutheria7
ENSRNOT00000003778ENSRNOG00000002802Rattus norvegicusMurinae100Cxcl1
ENSETET00000009122ENSETEG00000009123Echinops telfairiEutheria24
ENSETET00000014548ENSETEG00000014549Echinops telfairiEutheria24
ENSOCUT00000013932ENSOCUG00000013937Oryctolagus cuniculusEutheria5
ENSOCUT00000017942ENSOCUG00000017942Oryctolagus cuniculusEutheria5GRO1
ENSFCAT00000003138ENSFCAG00000003138Felis catusEutheria9
ENSDNOT00000016592ENSDNOG00000016593Dasypus novemcinctusEutheria21
ENSOGAT00000002737ENSOGAG00000002735Otolemur garnettiiEutheria0
ENSOGAT00000010695ENSOGAG00000010692Otolemur garnettiiEutheria1
ENSMMUT00000006405ENSMMUG00000004524Macaca mulattaEutheria1CXCL2
ENST00000296026ENSG00000163734Homo sapiensEutheria1CXCL3
ENSPTRT00000030092ENSPTRG00000016161Pan troglodytesEutheria1CXCL3
ENST00000296031ENSG00000163739Homo sapiensEutheria1CXCL1
ENSPTRT00000030088ENSPTRG00000016157Pan troglodytesEutheria1CXCL1
ENSPTRT00000030094ENSPTRG00000016163Pan troglodytesEutheria1CXCL2_F2
ENST00000264492ENSG00000081041Homo sapiensEutheria1CXCL2-201
ENSMMUT00000042190ENSMMUG00000030303Macaca mulattaEutheria1NP_001028050
ENSMMUT00000018006ENSMMUG00000012834Macaca mulattaEutheria1
ENSMMUT00000011700ENSMMUG00000008367Macaca mulattaEutheria1NP_001028051
ENSBTAT00000045994ENSBTAG00000037778Bos taurusEutheria11NP_001039978
ENSBTAT00000039536ENSBTAG00000027513Bos taurusEutheria10GROG
ENSBTAT00000022366ENSBTAG00000037558Bos taurusEutheria10GROB
ENSOANT00000011017ENSOANG00000006913Ornithorhynchus anatinusMammalia51XP_001511252
ENSOANT00000011012ENSOANG00000006911Ornithorhynchus anatinusMammalia41
ENSOANT00000010617ENSOANG00000006655Ornithorhynchus anatinusMammalia41
ENSRNOT00000033406ENSRNOG00000028015Rattus norvegicusMammalia100Cxcl4

Ensembl Orthologs and Within-Species Paralogs

GeneSpeciesAncestorMethodTreeFam
ENSMUSG00000029379Mus musculusMurinaeortholog_one2oneTF333433;
ENSRNOG00000002792Rattus norvegicusMurinaewithin_species_paralogTF333433;
ENSRNOG00000002802Rattus norvegicusMurinaewithin_species_paralogTF333433;
ENSMODG00000019188Monodelphis domesticaTheriaortholog_one2manyTF333433;
ENSRNOG00000002829Rattus norvegicusAmniotawithin_species_paralogTF333433;
ENSRNOG00000002843Rattus norvegicusAmniotawithin_species_paralogTF333433;
ENSRNOG00000028015Rattus norvegicusAmniotawithin_species_paralogTF333433;
ENSRNOG00000022242Rattus norvegicusEuteleostomiwithin_species_paralogTF333433;
ENSRNOG00000022256Rattus norvegicusEuteleostomiwithin_species_paralogTF333433;
ENSRNOG00000024899Rattus norvegicusEuteleostomiwithin_species_paralogTF335204;
ENSRNOG00000022298Rattus norvegicusEuteleostomiwithin_species_paralogTF333433;

Ensembl Family

ENSF00000001093: PRECURSOR

GeneSpeciesTreeFam
ENSDARG00000056824Danio rerioTF333433;
ENSDARG00000056772Danio rerio
ENSORLG00000005096Oryzias latipesTF333433;
ENSORLG00000007849Oryzias latipesTF333433;
ENSXETG00000023390Xenopus tropicalisTF333433;
ENSGALG00000011670Gallus gallusTF333433;
ENSGALG00000011672Gallus gallus
ENSGALG00000010339Gallus gallusTF335204;
ENSGALG00000011668Gallus gallusTF333433;
ENSDNOG00000017292Dasypus novemcinctusTF333433;
ENSDNOG00000016593Dasypus novemcinctusTF333433;
ENSDNOG00000008429Dasypus novemcinctusTF333433;
ENSDNOG00000005976Dasypus novemcinctusTF333433;
ENSDNOG00000003801Dasypus novemcinctusTF333433;
ENSETEG00000012391Echinops telfairiTF333433;
ENSETEG00000000483Echinops telfairiTF333433;
ENSETEG00000014549Echinops telfairiTF333433;
ENSETEG00000016666Echinops telfairiTF333433;
ENSETEG00000009123Echinops telfairiTF333433;
ENSMMUG00000004524Macaca mulattaTF333433;
ENSMMUG00000004527Macaca mulattaTF333433;
ENSMMUG00000030303Macaca mulattaTF333433;
ENSMMUG00000029754Macaca mulattaTF333433;
ENSMMUG00000001295Macaca mulattaTF333433;
ENSMMUG00000008367Macaca mulattaTF333433;
ENSMMUG00000029753Macaca mulattaTF333433;
ENSMMUG00000017829Macaca mulattaTF333433;
ENSMMUG00000030304Macaca mulattaTF333433;
ENSMMUG00000012834Macaca mulattaTF333433;
ENSMMUG00000003836Macaca mulattaTF333433;
ENSMMUG00000004526Macaca mulattaTF333433;
ENSPTRG00000016157Pan troglodytesTF333433;
ENSPTRG00000016163Pan troglodytesTF333433;
ENSPTRG00000016156Pan troglodytesTF333433;
ENSPTRG00000016161Pan troglodytesTF333433;
ENSPTRG00000016155Pan troglodytesTF333433;
ENSPTRG00000016160Pan troglodytesTF333433;
ENSPTRG00000016154Pan troglodytesTF333433;
ENSPTRG00000016159Pan troglodytesTF333433;
ENSPTRG00000016158Pan troglodytesTF333433;
ENSG00000163737Homo sapiensTF333433;
ENSG00000163736Homo sapiensTF333433;
ENSG00000169429Homo sapiensTF333433;
ENSG00000163735Homo sapiensTF333433;
ENSG00000124875Homo sapiensTF333433;
ENSG00000163734Homo sapiensTF333433;
ENSG00000109272Homo sapiensTF333433;
ENSG00000081041Homo sapiensTF333433;
ENSG00000163739Homo sapiensTF333433;
ENSCAFG00000003029Canis familiarisTF333433;
ENSCAFG00000003033Canis familiarisTF333433;
ENSLAFG00000018004Loxodonta africanaTF333433;
ENSLAFG00000011089Loxodonta africanaTF333433;
ENSLAFG00000000483Loxodonta africanaTF333433;
ENSBTAG00000027535Bos taurus
ENSBTAG00000011961Bos taurusTF333433;
ENSBTAG00000009812Bos taurusTF333433;
ENSBTAG00000019716Bos taurusTF333433;
ENSBTAG00000027513Bos taurusTF333433;
ENSBTAG00000016812Bos taurus
ENSOCUG00000011838Oryctolagus cuniculusTF333433;
ENSOCUG00000013937Oryctolagus cuniculusTF333433;
ENSOCUG00000017941Oryctolagus cuniculusTF333433;
ENSOCUG00000017942Oryctolagus cuniculusTF333433;
ENSOCUG00000011835Oryctolagus cuniculusTF333433;
ENSMUSG00000029380Mus musculusTF333433;
ENSMUSG00000058427Mus musculusTF333433;
ENSMUSG00000029371Mus musculusTF333433;
ENSMUSG00000029372Mus musculusTF333433;
ENSMUSG00000029373Mus musculusTF333433;
ENSMUSG00000029379Mus musculusTF333433;
ENSRNOG00000028015Rattus norvegicusTF333433;
ENSRNOG00000002829Rattus norvegicusTF333433;
ENSRNOG00000022242Rattus norvegicusTF333433;
ENSRNOG00000002843Rattus norvegicusTF333433;
ENSRNOG00000002792Rattus norvegicusTF333433;
ENSRNOG00000002802Rattus norvegicusTF333433;
ENSRNOG00000028043Rattus norvegicusTF333433;
ENSMODG00000019287Monodelphis domesticaTF333433;
ENSMODG00000019182Monodelphis domesticaTF333433;
ENSMODG00000019184Monodelphis domesticaTF333433;
ENSMODG00000019188Monodelphis domesticaTF333433;
NEWSINFRUG00000140726Fugu rubripes
NEWSINFRUG00000159726Fugu rubripes
ENSGACG00000001729Gasterosteus aculeatusTF333433;
ENSGACG00000019078Gasterosteus aculeatusTF333433;
GSTENG00004865001Tetraodon nigroviridis
GSTENG00033049001Tetraodon nigroviridis

Last Modified Tue Nov 13 11:06:03 2007 treefam@sanger.ac.uk