TreeFam
cr01.sctg1.wum.276.1
 Tree families database The Sanger Institute Beijing Genomics Institute
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Descriptions
TreeFam Ortholog
Ensembl Ortholog
Ensembl Family

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example

Descriptions

Sequence IDcr01.sctg1.wum.276.1 => Inparanoid
Transcript IDcr01.sctg1.wum.276
Gene IDcr01.sctg1.wum.276 (cr01.sctg1.wum.276.1)
Symbolcr01.sctg1.wum.276.1
SpeciesCaenorhabditis remanei (CAERE)
DescriptionContig1b.eannot.1327.final.final
Display IDcr01.sctg1.wum.276.1_CAERE (TF313420)
Related FamilyTF313420 (cr01.sctg1.wum.276.1)
Xrefs
Peptide
MKTVRFNKQALAVVAACFIFLLCIVSYFSTTSSEAHNTVVVGDRPRGGGRLAVRDVANRH
IAEQKEPEIARVIHSKSVGEVERVVSQEKIEKLRPARVDPKPQVEKVEEKTSTEETGVGE
APIQSSEGLEKLIGKIHYEDKDEENDLRRQKVKEMMIHAWQGYKNYSWGANELKPVAKTP
NSQNIFGGSQMPATIVDAADTLYIMDLKEQYKEARDYIEKNFSMAKSTSTLSVFETTIRF
LGGLLSLYALTQEPFYIEKAREVGEALLPAFNTPSGIPKSNLDVASKHASNYGWANGGQS
ILSEVGSLHLEFLYLSRIAQAPIFEKKVKKVRDALEKAEKPNGLYSNYISPDTGRFTGSH
MSLGALGDSFYEYLIKSYVQSNYTDRQAKNMYWDVSDAIQKHMIKVSKQSKLTYTVELNN
MQPQHKMGHLACFVPGMFALQAINEDTEEEKSRIMTLAEELAKTCHESYIRTETHIGPEM
FYFNDNDEATSKHSENGYIQRPEVIEGWFYLWRLTGKTMYRDWVWDAVQAVEKYCRVDSG
FTGLQNVYNPKSGRDDVMQSFFLAEFLKYAYLTFADDSLISLEKWVFNTEAHPVPILSH*
Nucleotide
ATGAAAACAGTTCGATTCAACAAACAGGCGCTTGCCGTCGTCGCCGCCTGTTTCATTTTC
CTTCTTTGCATCGTCTCCTACTTTTCAACAACGTCTTCAGAAGCACACAATACTGTAGTT
GTTGGTGATCGACCACGTGGAGGAGGACGTCTGGCTGTTCGTGATGTAGCAAACCGACAT
ATTGCAGAGCAGAAAGAGCCAGAGATAGCACGTGTGATCCATTCGAAATCAGTTGGAGAA
GTAGAAAGGGTGGTTAGCCAAGAAAAGATCGAGAAGTTGAGACCAGCGAGAGTTGATCCG
AAACCACAAGTTGAGAAAGTGGAAGAGAAGACAAGTACAGAAGAGACTGGAGTTGGAGAA
GCACCAATTCAATCTTCAGAAGGACTTGAGAAGTTGATTGGAAAGATTCATTATGAGGAT
AAAGATGAGGAAAATGATCTCCGTCGTCAAAAAGTGAAAGAAATGATGATTCACGCGTGG
CAAGGATATAAGAACTATTCATGGGGAGCCAATGAGTTGAAACCAGTGGCCAAGACACCG
AACTCACAGAATATATTCGGAGGAAGTCAGATGCCAGCAACGATTGTTGATGCAGCTGAC
ACTTTGTATATTATGGATTTGAAAGAACAATACAAAGAGGCCAGAGATTATATTGAGAAG
AACTTCTCGATGGCTAAATCAACATCAACTCTTTCGGTTTTCGAAACAACAATCAGATTC
CTTGGAGGACTTCTCTCATTGTATGCACTGACACAGGAACCATTTTATATAGAGAAGGCA
CGAGAGGTCGGAGAAGCTCTTCTACCTGCATTCAACACACCGTCTGGAATTCCAAAAAGT
AATTTGGATGTTGCTTCGAAACACGCGAGTAACTATGGATGGGCGAATGGAGGACAATCG
ATTCTATCGGAAGTTGGAAGTCTTCATCTTGAATTTCTTTATCTCAGTCGGATTGCTCAA
GCTCCAATCTTCGAGAAGAAGGTGAAGAAAGTGAGAGATGCACTCGAGAAGGCAGAGAAA
CCAAATGGATTGTACTCGAATTATATTAGTCCGGATACTGGAAGATTCACTGGAAGTCAT
ATGTCACTTGGAGCATTAGGAGATTCATTTTATGAGTATTTGATAAAGAGTTATGTTCAA
TCAAATTACACGGATAGGCAGGCGAAGAATATGTATTGGGATGTCAGTGATGCTATTCAG
AAACACATGATCAAGGTGTCGAAACAATCGAAATTGACCTACACTGTTGAGTTGAATAAC
ATGCAGCCTCAACATAAAATGGGACATCTCGCATGTTTCGTTCCTGGAATGTTCGCTCTT
CAAGCAATCAATGAAGACACCGAAGAAGAAAAATCAAGAATCATGACGTTGGCAGAGGAA
CTGGCTAAAACTTGTCATGAGAGCTACATTCGCACTGAAACTCATATTGGTCCGGAGATG
TTTTATTTCAATGATAACGATGAAGCAACGAGTAAACACTCGGAGAATGGATACATACAG
AGACCAGAAGTCATTGAAGGATGGTTTTATTTATGGAGATTAACCGGAAAGACAATGTAC
AGAGATTGGGTTTGGGATGCAGTGCAAGCAGTTGAGAAGTACTGTAGAGTTGACAGTGGA
TTCACTGGACTACAGAATGTATACAATCCTAAATCTGGTCGTGATGATGTGATGCAATCG
TTCTTCCTTGCTGAATTCCTGAAGTATGCCTACTTGACATTCGCTGATGATTCCCTGATA
TCTCTCGAAAAATGGGTTTTCAACACGGAAGCTCATCCGGTTCCGATTCTCAGCCATTAA

TreeFam Orthologs and Within-Species Paralogs [TF313420]

TranscriptGeneSpeciesAncestorScoreSymbol
At1g51590.1At1g51590Arabidopsis thalianaEukaryota100
At3g21160.1At3g21160Arabidopsis thalianaEukaryota100
CBG23347CBG23347Caenorhabditis briggsaeCaenorhabditis100
cr01.sctg285.wum.11cr01.sctg285.wum.11Caenorhabditis remaneiCaenorhabditis100cr01.sctg285.wum.11.1
FBtr0085510FBgn0051202Drosophila melanogasterBilateria63CG31202-RA
C52E4.5C52E4.5Caenorhabditis elegansCaenorhabditis100WBGene00008258
Smp_018150Smp_018150Schistosoma mansoniBilateria63
ENSOANT00000024988ENSOANG00000015845Ornithorhynchus anatinusBilateria61MAN1C1
FBtr0071479FBgn0010338Drosophila melanogasterBilateria63alpha-Man-I-RG
AGAP000558-RAAGAP000558Anopheles gambiaeBilateria63XP_310525
AAEL014721-RAAAEL014721Aedes aegyptiBilateria63
AAEL013678-RAAAEL013678Aedes aegyptiBilateria63
ENSXETT00000007975ENSXETG00000003692Xenopus tropicalisBilateria61MAN1C1
ENSETET00000012897ENSETEG00000012896Echinops telfairiBilateria61MAN1C1
ENSMODT00000017835ENSMODG00000013999Monodelphis domesticaBilateria61MAN1C1_F2
ENSDNOT00000015049ENSDNOG00000015045Dasypus novemcinctusBilateria61MAN1C1
ENSGALT00000001539ENSGALG00000001038Gallus gallusBilateria61MAN1C1
ENSTNIT00000008052ENSTNIG00000005215Tetraodon nigroviridisBilateria61MAN1C1
ENSORLT00000018645ENSORLG00000014871Oryzias latipesBilateria61MAN1C1
ENSGACT00000018028ENSGACG00000013607Gasterosteus aculeatusBilateria61MAN1C1
ENSSART00000002741ENSSARG00000002708Sorex araneusBilateria61MAN1C1
ENSOCUT00000008636ENSOCUG00000008635Oryctolagus cuniculusBilateria61MAN1C1
ENSLAFT00000004645ENSLAFG00000004643Loxodonta africanaBilateria61MAN1C1
ENSFCAT00000012795ENSFCAG00000012792Felis catusBilateria61MAN1C1
ENSMLUT00000005075ENSMLUG00000005078Myotis lucifugusBilateria61MAN1C1
ENSOGAT00000002104ENSOGAG00000002102Otolemur garnettiiBilateria61MAN1C1
ENSMUST00000054096ENSMUSG00000037306Mus musculusBilateria61Man1c1_F3
ENSRNOT00000022956ENSRNOG00000017087Rattus norvegicusBilateria61NP_001102157
ENSBTAT00000003994ENSBTAG00000003069Bos taurusBilateria61MAN1C1
ENSCAFT00000020252ENSCAFG00000012769Canis familiarisBilateria61MAN1C1
ENSMMUT00000006761ENSMMUG00000004788Macaca mulattaBilateria61MAN1C1
ENSPTRT00000000729ENSPTRG00000000363Pan troglodytesBilateria61MAN1C1
ENST00000374332ENSG00000117643Homo sapiensBilateria61MAN1C1
ENSBTAT00000039902ENSBTAG00000003586Bos taurusBilateria62MAN1A2
ENSOGAT00000003690ENSOGAG00000003687Otolemur garnettiiBilateria62MAN1A2
ENSSART00000001196ENSSARG00000001200Sorex araneusBilateria62MAN1A2
ENSETET00000003097ENSETEG00000003095Echinops telfairiBilateria62MAN1A2
ENSMLUT00000014235ENSMLUG00000014231Myotis lucifugusBilateria62MAN1A2
ENSLAFT00000017260ENSLAFG00000017263Loxodonta africanaBilateria62MAN1A2
ENSRNOT00000020480ENSRNOG00000015226Rattus norvegicusBilateria62Man1a2
ENSMUST00000008907ENSMUSG00000008763Mus musculusBilateria62Man1a2
ENSMMUT00000030511ENSMMUG00000021685Macaca mulattaBilateria62MAN1A2
ENSPTRT00000047368ENSPTRG00000024134Pan troglodytesBilateria62MAN1A2
ENST00000356554ENSG00000198162Homo sapiensBilateria62MAN1A2
ENSCAFT00000015692ENSCAFG00000009873Canis familiarisBilateria62MAN1A2
ENSXETT00000021821ENSXETG00000009907Xenopus tropicalisBilateria62MAN1A2
ENSMODT00000006527ENSMODG00000005193Monodelphis domesticaBilateria62MAN1A2
ENSOANT00000004857ENSOANG00000003066Ornithorhynchus anatinusBilateria62MAN1A2
ENSGALT00000023197ENSGALG00000014361Gallus gallusBilateria62MAN1A2
ENSTNIT00000018960ENSTNIG00000015657Tetraodon nigroviridisBilateria62MAN1A2
ENSDART00000102192ENSDARG00000041728Danio rerioBilateria62MAN1A2
ENSGACT00000010970ENSGACG00000008277Gasterosteus aculeatusBilateria62MAN1A2
ENSORLT00000010471ENSORLG00000008338Oryzias latipesBilateria62MAN1A2
ENSDNOT00000008112ENSDNOG00000008114Dasypus novemcinctusBilateria62MAN1A2
ENSFCAT00000018985ENSFCAG00000019000Felis catusBilateria62MAN1A2
ENSOCUT00000012648ENSOCUG00000012648Oryctolagus cuniculusBilateria62MAN1A2
ENSCSAVT00000000191ENSCSAVG00000000105Ciona savignyiBilateria62
ENSCINT00000008191ENSCING00000003975Ciona intestinalisBilateria62
ENSLAFT00000010503ENSLAFG00000010501Loxodonta africanaBilateria62MAN1A1
ENSETET00000009639ENSETEG00000009639Echinops telfairiBilateria62MAN1A1
ENSSART00000000609ENSSARG00000000603Sorex araneusBilateria62MAN1A1
ENSOCUT00000006702ENSOCUG00000006700Oryctolagus cuniculusBilateria62MAN1A1
ENSMLUT00000003864ENSMLUG00000003864Myotis lucifugusBilateria62MAN1A1
ENSOGAT00000012654ENSOGAG00000012653Otolemur garnettiiBilateria62MAN1A1
ENSDNOT00000002017ENSDNOG00000002017Dasypus novemcinctusBilateria62MAN1A1
ENSRNOT00000057422ENSRNOG00000000800Rattus norvegicusBilateria62Man1a_predicted_F2
ENSMUST00000105470ENSMUSG00000003746Mus musculusBilateria62Man1a_F2
ENSBTAT00000052171ENSBTAG00000040594Bos taurusBilateria62
ENSBTAT00000006218ENSBTAG00000024381Bos taurusBilateria62XP_606562
ENSMMUT00000018678ENSMMUG00000013304Macaca mulattaBilateria62MAN1A1
ENSPTRT00000034277ENSPTRG00000018558Pan troglodytesBilateria62MAN1A1_F2
ENST00000368468ENSG00000111885Homo sapiensBilateria62MAN1A1-001
ENSCAFT00000001467ENSCAFG00000000945Canis familiarisBilateria62Q6JDJ4
ENSXETT00000048930ENSXETG00000022600Xenopus tropicalisBilateria62
ENSMODT00000022553ENSMODG00000017780Monodelphis domesticaBilateria62MAN1A1
ENSGALT00000037376ENSGALG00000014878Gallus gallusBilateria62MAN1A1_F2
ENSOANT00000014031ENSOANG00000008806Ornithorhynchus anatinusBilateria62MAN1A1
ENSTNIT00000000819ENSTNIG00000000331Tetraodon nigroviridisBilateria61MAN1A1---2-of-2-
ENSDART00000006423ENSDARG00000005652Danio rerioBilateria61si:dkey-164k19
ENSORLT00000022132ENSORLG00000017683Oryzias latipesBilateria61MAN1A1
ENSGACT00000009005ENSGACG00000006766Gasterosteus aculeatusBilateria61MAN1A1_F2
ENSTNIT00000022581ENSTNIG00000019145Tetraodon nigroviridisBilateria61MAN1A1--1-of-2-

Ensembl Orthologs and Within-Species Paralogs

GeneSpeciesAncestorMethodTreeFam

Ensembl Family


Last Modified Tue Nov 13 11:06:03 2007 treefam@sanger.ac.uk