TreeFam
cr01.sctg1.wum.705.1
 Tree families database The Sanger Institute Beijing Genomics Institute
[Home] [Search] [Browse] [TaxaView] [Download] [FAQ]

Navigation

Descriptions
TreeFam Ortholog
Ensembl Ortholog
Ensembl Family

Quick Search
example

Descriptions

Sequence IDcr01.sctg1.wum.705.1 => Inparanoid
Transcript IDcr01.sctg1.wum.705
Gene IDcr01.sctg1.wum.705 (cr01.sctg1.wum.705.1)
Symbolcr01.sctg1.wum.705.1
SpeciesCaenorhabditis remanei (CAERE)
DescriptionContig1c.fgenesh_plus.26.final
Display IDcr01.sctg1.wum.705.1_CAERE (TF314577)
Related FamilyTF314577 (cr01.sctg1.wum.705.1)
Xrefs
Peptide
MKPNILNSLLLLFCLLTTCEAGPRINCYPEPNANQNLCETRGCIWNPVDDVDGTPWCYFK
DGVGYNLASQNGTTFNLQKNNGPKNPWGIDFQNIQIRTSTIGGSVLNVKIGVDCRYEPPV
DFPRSTIATSEILSFTTASSDDLFWFSVIRNSTNRKIFDTSLGGLIFSDQFIQLSTYLPS
ENMYGWGENAHQSLKHNFSRYLTWGMLARDQPPNSGNLDTMNLYGVHPFYMCLEPDGNAH
GVFIFNSNPQEVTTAPGPSLIYRTIGGNLDIYFFPGPTPALVIQQYLAFIGKPFLPAYWA
LGYQLSRYGYSGLDEMKQRVGASRIPLDIAVADIDYMNRYKDFSTNNNWSGFEDYVNVMH
GWNMKMIPIFDPAVEADYLPFQRAMAANAKFIEWEDYSQVQPNIQNLYPMAKNTKVMLGV
VWPDHHVAFPDFLDSTGRTQAWWKTELELYHSQLSFDGIWIDMNEPANFGTNEQHPWYFD
DADHPNDAPLFCPTNGTNRWDLPPYQTHAVYYYGGNENNVYLSSKTLCLAGVQNNGSYRF
YDVKNLYGLKEAIPTQQALMECTGKRGAVVSRSTFPSAGRYAGHWLGDNTARWEDLRTSV
IGAQEFNLFGIPYVGSDVCGFLGTSNEELCLRWQQMGAFHSFFRNHNTLGEPAQDPAVWP
SVAAATKTANLFRYQYLPYLFSLHFQASQSGLTVVRPVFFEYPTDTETLDLGYQFMWGSN
ILVAPVLYQGAVTTNLYLPTDVWYSLFDYRYGSKIDSGYITVPSPTTSRIPVFVRGDAIP
RQTPTTTTTMSRHNPFELLIAPCQLGKAVGVLYWDDGQSIVDSFDTHDFHQFDFNYISTS
NGAQLTITRTRKGTIVLPTMDILEIFNYPSPPNFRSFFLNGQSVNINVQSSTYSGITKTL
YISTKDLIDLTSSDSITLEWSNVSK*
Nucleotide
ATGAAACCAAATATTCTGAATTCCCTGCTTCTTCTATTTTGTTTGTTAACGACTTGTGAG
GCAGGTCCCCGAATCAATTGTTACCCGGAACCGAATGCCAATCAAAATCTGTGTGAAACA
CGTGGATGCATCTGGAATCCCGTTGACGATGTCGATGGAACTCCTTGGTGTTATTTCAAA
GACGGTGTTGGATACAATCTAGCATCTCAAAATGGAACTACTTTCAACCTTCAGAAAAAC
AATGGACCCAAGAATCCGTGGGGCATTGATTTTCAGAATATTCAGATCAGAACATCAACT
ATTGGAGGAAGTGTTCTAAATGTGAAGATTGGAGTGGATTGTAGATACGAACCACCTGTT
GATTTCCCGAGATCAACCATTGCCACTTCTGAAATTCTCTCGTTTACCACTGCATCCTCA
GATGATTTATTTTGGTTTTCTGTTATTCGAAACAGTACAAATCGGAAGATCTTCGACACA
TCACTCGGAGGACTCATATTTTCGGATCAATTCATCCAATTATCCACTTATCTTCCTAGC
GAGAACATGTATGGATGGGGAGAAAATGCTCATCAATCATTAAAACATAACTTTTCTCGT
TACTTGACATGGGGAATGTTGGCTCGAGATCAACCTCCAAACTCTGGAAATCTGGATACA
ATGAATCTTTACGGTGTCCATCCATTCTATATGTGTCTGGAACCAGATGGAAATGCTCAT
GGAGTTTTCATCTTTAATTCCAATCCACAGGAAGTTACAACTGCTCCAGGGCCTTCTTTG
ATCTATCGAACGATTGGTGGCAACCTGGATATCTATTTTTTCCCTGGACCAACTCCTGCT
TTAGTCATTCAACAATATCTTGCATTTATTGGGAAACCGTTTCTCCCGGCGTATTGGGCA
CTGGGTTATCAATTATCCAGGTACGGATACAGTGGATTAGATGAGATGAAACAAAGAGTT
GGAGCTAGCCGAATTCCTTTGGATATTGCTGTTGCTGACATCGATTATATGAATAGATAC
AAGGATTTCAGCACCAATAATAATTGGAGTGGATTTGAAGACTATGTAAATGTTATGCAT
GGATGGAATATGAAAATGATTCCTATCTTCGACCCAGCAGTGGAAGCTGATTATCTTCCC
TTCCAGCGAGCAATGGCTGCAAATGCAAAGTTCATAGAATGGGAAGATTATTCTCAGGTT
CAACCAAATATTCAAAATTTGTATCCAATGGCGAAAAACACAAAAGTTATGCTTGGTGTG
GTGTGGCCAGATCACCATGTGGCTTTCCCTGATTTCCTCGATTCAACTGGAAGAACTCAA
GCATGGTGGAAAACTGAGCTTGAATTGTATCATTCTCAATTATCTTTCGATGGAATTTGG
ATTGATATGAATGAGCCAGCCAACTTTGGAACAAATGAACAGCATCCTTGGTACTTCGAT
GATGCCGATCATCCAAACGATGCTCCGTTATTTTGTCCAACTAATGGAACCAATCGATGG
GATTTGCCACCGTATCAGACTCATGCAGTTTATTATTATGGAGGGAATGAAAATAATGTC
TATCTCTCCTCGAAGACTCTTTGCTTAGCAGGTGTTCAGAACAATGGATCATATAGATTT
TACGATGTGAAGAATCTGTACGGCTTGAAAGAAGCCATTCCAACTCAACAAGCATTGATG
GAATGTACTGGAAAACGTGGAGCAGTCGTGTCTCGTTCAACATTTCCATCAGCTGGAAGA
TATGCGGGACATTGGTTGGGAGATAACACTGCGAGATGGGAAGATTTAAGAACTTCTGTT
ATTGGTGCACAGGAATTCAACTTGTTCGGAATACCATATGTTGGCTCTGACGTTTGTGGT
TTTCTCGGTACATCTAACGAGGAGCTTTGTCTTCGTTGGCAGCAAATGGGTGCTTTCCAC
AGTTTCTTTAGAAATCACAATACTCTCGGAGAGCCTGCTCAAGATCCAGCCGTCTGGCCA
TCTGTCGCAGCAGCCACAAAAACTGCGAATCTGTTCCGTTATCAATATCTTCCGTATCTG
TTCAGTCTTCATTTCCAAGCTTCTCAATCTGGATTGACAGTTGTTCGTCCAGTGTTCTTC
GAATATCCGACTGATACTGAGACTTTGGATTTGGGATATCAATTCATGTGGGGTTCGAAC
ATTCTTGTTGCTCCAGTACTTTATCAAGGTGCAGTTACAACAAACTTGTATCTTCCAACG
GATGTATGGTACTCATTATTTGATTATCGTTATGGAAGTAAGATCGACTCGGGATACATT
ACTGTTCCATCACCAACTACTTCAAGAATCCCAGTTTTCGTCAGAGGCGATGCAATCCCT
CGTCAAACCCCAACGACTACAACCACAATGAGTCGTCACAATCCATTCGAACTTCTTATT
GCCCCATGTCAACTTGGTAAAGCAGTAGGAGTTTTGTATTGGGATGACGGTCAGAGTATA
GTTGATTCATTCGACACTCATGATTTCCATCAATTTGATTTCAACTACATTTCGACGAGC
AATGGAGCACAACTAACGATTACAAGAACCAGAAAGGGAACCATCGTTCTTCCAACCATG
GATATTCTGGAGATCTTCAACTACCCGTCTCCTCCGAATTTCCGTTCATTCTTCCTCAAT
GGCCAGTCGGTCAATATCAATGTCCAGTCCTCGACCTACTCTGGCATAACAAAAACTCTC
TATATTTCCACGAAAGACTTGATTGATCTTACCTCTTCTGATTCAATCACATTGGAATGG
TCTAATGTTTCGAAGTAA

TreeFam Orthologs and Within-Species Paralogs [TF314577]

TranscriptGeneSpeciesAncestorScoreSymbol
At1g68560.1At1g68560Arabidopsis thalianaEukaryota100
At3g45940.1At3g45940Arabidopsis thalianaEukaryota100
At5g11720.1At5g11720Arabidopsis thalianaEukaryota100
cr01.sctg113.wum.22cr01.sctg113.wum.22Caenorhabditis remaneiCaenorhabditis100cr01.sctg113.wum.22.1
cr01.sctg2914.wum.1cr01.sctg2914.wum.1Caenorhabditis remaneiCaenorhabditis100cr01.sctg2914.wum.1.1
cr01.sctg9.wum.207cr01.sctg9.wum.207Caenorhabditis remaneiCaenorhabditis100cr01.sctg9.wum.207.1
BGIOSIFCE000242BGIOSIFCE000242Oryza sativaEukaryota100BGIOSIFCE000242.1
Smp_133210Smp_133210Schistosoma mansoniBilateria92
Smp_020340Smp_020340Schistosoma mansoniBilateria92
SPAC1039.11cSPAC1039.11cSchizosaccharomyces pombeEukaryota97
SPAC30D11.01cSPAC30D11.01cSchizosaccharomyces pombeEukaryota97
SPAPB24D3.10cSPAPB24D3.10cSchizosaccharomyces pombeEukaryota97agl1
CBG11523CBG11523Caenorhabditis briggsaeCaenorhabditis100
ENSDNOT00000000327ENSDNOG00000000325Dasypus novemcinctusBilateria88
ENSOGAT00000011575ENSOGAG00000011568Otolemur garnettiiBilateria88
ENSMLUT00000017273ENSMLUG00000017268Myotis lucifugusBilateria88
ENSOCUT00000000872ENSOCUG00000000872Oryctolagus cuniculusBilateria88
ENSCAFT00000006185ENSCAFG00000025387Canis familiarisBilateria88XP_539872
ENSMMUT00000028010ENSMMUG00000019937Macaca mulattaBilateria88
ENST00000378229ENSG00000204987Homo sapiensBilateria88AC091742_F2
ENSPTRT00000055167ENSPTRG00000028382Pan troglodytesBilateria88XP_519434
ENSSART00000000702ENSSARG00000000701Sorex araneusBilateria88
ENSCINT00000008119ENSCING00000003924Ciona intestinalisBilateria75
ENSCSAVT00000008032ENSCSAVG00000004731Ciona savignyiBilateria75
ENSCINT00000016087ENSCING00000007859Ciona intestinalisBilateria80
ENSOCUT00000003887ENSOCUG00000003878Oryctolagus cuniculusBilateria81SI
ENSDNOT00000019975ENSDNOG00000019975Dasypus novemcinctusBilateria81SI
ENSSART00000001950ENSSARG00000001906Sorex araneusBilateria81
ENSMLUT00000000902ENSMLUG00000000881Myotis lucifugusBilateria81SI
ENSOANT00000023503ENSOANG00000014928Ornithorhynchus anatinusBilateria81
ENSLAFT00000014391ENSLAFG00000014390Loxodonta africanaBilateria81SI
ENSMODT00000020704ENSMODG00000016273Monodelphis domesticaBilateria81SI
ENSOGAT00000000040ENSOGAG00000000040Otolemur garnettiiBilateria81SI
ENSETET00000007696ENSETEG00000007692Echinops telfairiBilateria81SI
ENSRNOT00000042844ENSRNOG00000031067Rattus norvegicusBilateria81Si_F4
ENSMUST00000094190ENSMUSG00000027790Mus musculusBilateria81NP_001074606
ENSCAFT00000022936ENSCAFG00000014397Canis familiarisBilateria88SI
ENSBTAT00000023366ENSBTAG00000006975Bos taurusBilateria81SI
ENSMMUT00000045629ENSMMUG00000001302Macaca mulattaBilateria81SI
ENST00000264382ENSG00000090402Homo sapiensBilateria81SI
ENSPTRT00000029076ENSPTRG00000015590Pan troglodytesBilateria81SI
ENSCAFT00000022929ENSCAFG00000025518Canis familiarisBilateria81XP_545265
ENSDART00000066734ENSDARG00000045384Danio rerioBilateria81LOC571170
ENSORLT00000015393ENSORLG00000012288Oryzias latipesBilateria81MGAM
ENSTNIT00000002145ENSTNIG00000014914Tetraodon nigroviridisBilateria81MGAM
ENSGACT00000009570ENSGACG00000007181Gasterosteus aculeatusBilateria81MGAM
ENSSART00000009462ENSSARG00000009394Sorex araneusBilateria81
ENSETET00000016404ENSETEG00000016401Echinops telfairiBilateria81
ENSXETT00000057725ENSXETG00000001148Xenopus tropicalisBilateria81
ENSGALT00000039241ENSGALG00000009511Gallus gallusBilateria81
ENSOANT00000021739ENSOANG00000013782Ornithorhynchus anatinusBilateria81
ENSMUST00000071535ENSMUSG00000068587Mus musculusBilateria81Mgam
ENSGALT00000000257ENSGALG00000000194Gallus gallusBilateria88
ENSOCUT00000000427ENSOCUG00000000423Oryctolagus cuniculusBilateria88MGAM
ENSETET00000015106ENSETEG00000015105Echinops telfairiBilateria88
ENSMODT00000000749ENSMODG00000000571Monodelphis domesticaBilateria88
ENSMODT00000020705ENSMODG00000000054Monodelphis domesticaBilateria81
ENSMMUT00000028014ENSMMUG00000029356Macaca mulattaBilateria88
ENSDNOT00000016815ENSDNOG00000016812Dasypus novemcinctusBilateria81
ENSRNOT00000016912ENSRNOG00000026177Rattus norvegicusBilateria81Mgam_predicted_F2
ENSRNOT00000016684ENSRNOG00000038989Rattus norvegicusBilateria88
ENSRNOT00000049704ENSRNOG00000038991Rattus norvegicusBilateria88
ENSOCUT00000008189ENSOCUG00000008177Oryctolagus cuniculusBilateria81
ENSOANT00000008242ENSOANG00000005186Ornithorhynchus anatinusBilateria88
ENSOANT00000008655ENSOANG00000005443Ornithorhynchus anatinusBilateria88
ENSOANT00000006914ENSOANG00000004361Ornithorhynchus anatinusBilateria88XP_001519457
ENSMLUT00000017269ENSMLUG00000017263Myotis lucifugusBilateria81
ENSMMUT00000022860ENSMMUG00000016273Macaca mulattaBilateria81
ENST00000312952ENSG00000179087Homo sapiensBilateria81MGAM
ENSPTRT00000036649ENSPTRG00000019786Pan troglodytesBilateria81MGAM_F2
ENSCAFT00000006192ENSCAFG00000003841Canis familiarisBilateria81MGAM
ENSOANT00000023334ENSOANG00000014813Ornithorhynchus anatinusBilateria81
ENSFCAT00000019124ENSFCAG00000019131Felis catusBilateria81
ENSMODT00000035567ENSMODG00000024400Monodelphis domesticaBilateria81
ENSCAFT00000006189ENSCAFG00000025371Canis familiarisBilateria81
ENSBTAT00000023360ENSBTAG00000017539Bos taurusBilateria81XP_594452
ENSMMUT00000017013ENSMMUG00000012146Macaca mulattaBilateria81
ENST00000397504ENSG00000214088Homo sapiensBilateria81AC091742
ENSPTRT00000063729ENSPTRG00000033984Pan troglodytesBilateria81
ENSTNIT00000021389ENSTNIG00000017992Tetraodon nigroviridisBilateria73GAA
ENSORLT00000011251ENSORLG00000008970Oryzias latipesBilateria73GAA
ENSGACT00000015522ENSGACG00000011709Gasterosteus aculeatusBilateria73GAA
ENSTNIT00000011253ENSTNIG00000008241Tetraodon nigroviridisBilateria73
ENSGACT00000025895ENSGACG00000019551Gasterosteus aculeatusBilateria73
ENSORLT00000012733ENSORLG00000010155Oryzias latipesBilateria73
ENSGALT00000006646ENSGALG00000004181Gallus gallusBilateria73GAA
ENSOANT00000021125ENSOANG00000013385Ornithorhynchus anatinusBilateria73
ENSMODT00000011445ENSMODG00000009003Monodelphis domesticaBilateria73
ENSETET00000003636ENSETEG00000003632Echinops telfairiBilateria73GAA
ENSFCAT00000008247ENSFCAG00000008245Felis catusBilateria73GAA
ENSOANT00000008317ENSOANG00000005232Ornithorhynchus anatinusBilateria73GAA_F2
ENSXETT00000002742ENSXETG00000001281Xenopus tropicalisBilateria73GAA
ENSMLUT00000009565ENSMLUG00000009543Myotis lucifugusBilateria73GAA
ENSMODT00000002708ENSMODG00000002181Monodelphis domesticaBilateria73GAA
ENSOGAT00000006098ENSOGAG00000006089Otolemur garnettiiBilateria73GAA
ENSMUST00000106259ENSMUSG00000025579Mus musculusBilateria73Gaa
ENSMMUT00000013383ENSMMUG00000009589Macaca mulattaBilateria73GAA
ENSPTRT00000043482ENSPTRG00000009736Pan troglodytesBilateria73GAA
ENST00000390015ENSG00000171298Homo sapiensBilateria73GAA-202
ENSCAFT00000009007ENSCAFG00000005589Canis familiarisBilateria73GAA
ENSBTAT00000021325ENSBTAG00000016021Bos taurusBilateria73LYAG
ENSCSAVT00000015074ENSCSAVG00000008726Ciona savignyiBilateria89
ENSCINT00000016092ENSCING00000007860Ciona intestinalisBilateria89
ENSGALT00000011411ENSGALG00000007043Gallus gallusBilateria91XP_001235992
ENSCSAVT00000003412ENSCSAVG00000001997Ciona savignyiBilateria95
ENSCINT00000009950ENSCING00000004798Ciona intestinalisBilateria95
ENSCINT00000009972ENSCING00000017210Ciona intestinalisBilateria95

Ensembl Orthologs and Within-Species Paralogs

GeneSpeciesAncestorMethodTreeFam

Ensembl Family


Last Modified Tue Nov 13 11:06:03 2007 treefam@sanger.ac.uk